Sample Information

Input Data

Type of value/normalization: pool_ratio

Internal Standard Plot

Sample group for x-axis:

Input_Name

Sample group for color:

no_color

Scale for y axis:

Plots of Metabolic Compounds

Summary table

Summary plot

Stats Table

*students t-test performed for pairwise comparisons
*two way anova and Tukey post-hoc test performed for table below

PCA plot

Percent variance of each PC

PCA loadings

Software used

Return to table of contents

R packages

## R version 4.1.1 (2021-08-10)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 20.04.5 LTS
## 
## Matrix products: default
## BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
## LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## attached base packages:
## [1] grid      stats     graphics  grDevices utils     datasets  methods  
## [8] base     
## 
## other attached packages:
##  [1] shinybusy_0.3.1          knitr_1.42               kableExtra_1.3.4        
##  [4] rmarkdown_2.20           readr_2.1.4              IsoCorrectoR_1.12.0     
##  [7] circlize_0.4.15          ComplexHeatmap_2.10.0    rstatix_0.7.2           
## [10] ggpubr_0.6.0             ggfortify_0.4.15         shinydisconnect_0.1.0   
## [13] plotly_4.10.1            shinycssloaders_1.0.0    rhandsontable_0.3.8     
## [16] tibble_3.2.0             rio_0.5.29               shinyWidgets_0.7.6      
## [19] shinydashboardPlus_2.0.3 shinythemes_1.2.0        shinydashboard_0.7.2    
## [22] shinyjs_2.1.0            DT_0.27                  ggplot2_3.4.1           
## [25] dplyr_1.1.0              tidyr_1.3.0              shiny_1.7.4             
## 
## loaded via a namespace (and not attached):
##   [1] colorspace_2.1-0    ggsignif_0.6.4      rjson_0.2.20       
##   [4] ellipsis_0.3.2      GlobalOptions_0.1.2 clue_0.3-60        
##   [7] rstudioapi_0.14     farver_2.1.1        bit64_4.0.5        
##  [10] fansi_1.0.4         xml2_1.3.3          codetools_0.2-18   
##  [13] doParallel_1.0.16   cachem_1.0.7        jsonlite_1.8.4     
##  [16] broom_1.0.4         cluster_2.1.2       png_0.1-7          
##  [19] compiler_4.1.1      httr_1.4.5          backports_1.4.1    
##  [22] fastmap_1.1.1       lazyeval_0.2.2      cli_3.6.0          
##  [25] later_1.3.0         htmltools_0.5.4     tools_4.1.1        
##  [28] gtable_0.3.1        glue_1.6.2          Rcpp_1.0.10        
##  [31] carData_3.0-5       cellranger_1.1.0    jquerylib_0.1.4    
##  [34] vctrs_0.5.2         svglite_2.1.1       crosstalk_1.2.0    
##  [37] iterators_1.0.13    xfun_0.37           stringr_1.5.0      
##  [40] openxlsx_4.2.5.2    rvest_1.0.3         mime_0.12          
##  [43] lifecycle_1.0.3     WriteXLS_6.3.0      scales_1.2.1       
##  [46] vroom_1.6.1         hms_1.1.2           promises_1.2.0.1   
##  [49] parallel_4.1.1      RColorBrewer_1.1-3  yaml_2.3.7         
##  [52] curl_5.0.0          memoise_2.0.1       gridExtra_2.3      
##  [55] sass_0.4.5          stringi_1.7.12      highr_0.10         
##  [58] S4Vectors_0.32.4    foreach_1.5.1       checkmate_2.1.0    
##  [61] BiocGenerics_0.40.0 zip_2.2.2           shape_1.4.6        
##  [64] systemfonts_1.0.4   rlang_1.1.0         pkgconfig_2.0.3    
##  [67] matrixStats_0.61.0  fontawesome_0.5.0   pracma_2.3.3       
##  [70] evaluate_0.20       purrr_1.0.1         labeling_0.4.2     
##  [73] htmlwidgets_1.6.1   bit_4.0.5           tidyselect_1.2.0   
##  [76] magrittr_2.0.3      R6_2.5.1            IRanges_2.28.0     
##  [79] generics_0.1.3      pillar_1.8.1        haven_2.5.2        
##  [82] foreign_0.8-81      withr_2.5.0         abind_1.4-5        
##  [85] crayon_1.5.2        car_3.1-1           utf8_1.2.3         
##  [88] tzdb_0.3.0          GetoptLong_1.0.5    readxl_1.4.2       
##  [91] data.table_1.14.8   forcats_1.0.0       webshot_0.5.4      
##  [94] digest_0.6.31       xtable_1.8-4        httpuv_1.6.9       
##  [97] stats4_4.1.1        munsell_0.5.0       viridisLite_0.4.1  
## [100] bslib_0.4.2         quadprog_1.5-8

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